STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111235759Uncharacterized protein. (104 aa)    
Predicted Functional Partners:
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.827
yars1
Tyrosine--tRNA ligase.
      
 0.695
mycbpap
Mycbp associated protein.
    
 
 0.691
wdr90
WD repeat domain 90.
    
   0.663
pgk1
Phosphoglycerate kinase.
    
 
 0.608
ENSSDUP00000003333
Si:ch73-81k8.2.
    
 
 0.600
polr3e
Polymerase (RNA) III (DNA directed) polypeptide E.
      
 0.559
Spag17
Uncharacterized protein.
    
 
 0.541
ENSSDUP00000000915
LRRcap domain-containing protein.
    
 
 0.521
spata4
Spermatogenesis associated 4.
    
   0.516
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.