STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111232868Histone H3.3. (136 aa)    
Predicted Functional Partners:
LOC111222703
Lysine (K)-specific demethylase 6A, like.
   
 0.858
kdm6a
Lysine (K)-specific demethylase 6A.
   
 0.858
ENSSDUP00000021538
Lysine (K)-specific demethylase 6B, b.
   
 0.858
kdm6b
Lysine (K)-specific demethylase 6B, a.
   
 0.858
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.785
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 0.752
ENSSDUP00000000441
AT rich interactive domain 4A (RBP1-like).
   
 0.747
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.747
dot1l
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
   
 0.746
rbbp5
Retinoblastoma binding protein 5.
    
 0.741
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.