STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptssaSerine palmitoyltransferase, small subunit A. (68 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 0.887
ENSSDUP00000025139
Uncharacterized protein.
    
 0.887
ormdl1
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.807
ism1
Isthmin 1.
    
 0.761
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 0.761
LOC111235747
Serine palmitoyltransferase, long chain base subunit 2b.
    
 0.761
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.761
LOC111235755
Isthmin 2b.
    
 0.691
sptssb
Serine palmitoyltransferase, small subunit B.
  
  
0.687
ormdl2
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.673
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.