RBPMS protein (Seriola dumerili) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

RBPMS

RNA binding protein, mRNA processing factor. (194 aa)

Predicted Functional Partners:

ENSSDUP00000018129

0.687

LOC111219821

0.687

LOC111226201

0.687

esrp1

0.538

LOC111219944

0.538

ik

0.532

LOC111231504

0.525

LOC111223700

0.525

rbfox1

0.525

LOC111229991

0.509

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000018129	LOC111223700	ENSSDUP00000018129	ENSSDUP00000013090	QKI, KH domain containing, RNA binding b.	RRM domain-containing protein.	0.456
ENSSDUP00000018129	LOC111229991	ENSSDUP00000018129	ENSSDUP00000011990	QKI, KH domain containing, RNA binding b.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.456
ENSSDUP00000018129	LOC111231504	ENSSDUP00000018129	ENSSDUP00000005816	QKI, KH domain containing, RNA binding b.	RNA binding fox-1 homolog 2.	0.456
ENSSDUP00000018129	RBPMS	ENSSDUP00000018129	ENSSDUP00000014922	QKI, KH domain containing, RNA binding b.	RNA binding protein, mRNA processing factor.	0.687
ENSSDUP00000018129	rbfox1	ENSSDUP00000018129	ENSSDUP00000022635	QKI, KH domain containing, RNA binding b.	RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.	0.460
LOC111219821	LOC111223700	ENSSDUP00000018767	ENSSDUP00000013090	QKI, KH domain containing, RNA binding 2.	RRM domain-containing protein.	0.456
LOC111219821	LOC111229991	ENSSDUP00000018767	ENSSDUP00000011990	QKI, KH domain containing, RNA binding 2.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.456
LOC111219821	LOC111231504	ENSSDUP00000018767	ENSSDUP00000005816	QKI, KH domain containing, RNA binding 2.	RNA binding fox-1 homolog 2.	0.456
LOC111219821	RBPMS	ENSSDUP00000018767	ENSSDUP00000014922	QKI, KH domain containing, RNA binding 2.	RNA binding protein, mRNA processing factor.	0.687
LOC111219821	rbfox1	ENSSDUP00000018767	ENSSDUP00000022635	QKI, KH domain containing, RNA binding 2.	RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.	0.485
LOC111219944	RBPMS	ENSSDUP00000004240	ENSSDUP00000014922	Epithelial splicing regulatory protein 2.	RNA binding protein, mRNA processing factor.	0.538
LOC111223700	ENSSDUP00000018129	ENSSDUP00000013090	ENSSDUP00000018129	RRM domain-containing protein.	QKI, KH domain containing, RNA binding b.	0.456
LOC111223700	LOC111219821	ENSSDUP00000013090	ENSSDUP00000018767	RRM domain-containing protein.	QKI, KH domain containing, RNA binding 2.	0.456
LOC111223700	LOC111226201	ENSSDUP00000013090	ENSSDUP00000022338	RRM domain-containing protein.	QKI, KH domain containing, RNA binding a.	0.456
LOC111223700	RBPMS	ENSSDUP00000013090	ENSSDUP00000014922	RRM domain-containing protein.	RNA binding protein, mRNA processing factor.	0.525
LOC111226201	LOC111223700	ENSSDUP00000022338	ENSSDUP00000013090	QKI, KH domain containing, RNA binding a.	RRM domain-containing protein.	0.456
LOC111226201	LOC111229991	ENSSDUP00000022338	ENSSDUP00000011990	QKI, KH domain containing, RNA binding a.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.456
LOC111226201	LOC111231504	ENSSDUP00000022338	ENSSDUP00000005816	QKI, KH domain containing, RNA binding a.	RNA binding fox-1 homolog 2.	0.456
LOC111226201	RBPMS	ENSSDUP00000022338	ENSSDUP00000014922	QKI, KH domain containing, RNA binding a.	RNA binding protein, mRNA processing factor.	0.687
LOC111226201	rbfox1	ENSSDUP00000022338	ENSSDUP00000022635	QKI, KH domain containing, RNA binding a.	RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.	0.460