STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000015084Integrase catalytic domain-containing protein. (337 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.795
ENSSDUP00000023101
FA complementation group M.
    
 0.795
ENSSDUP00000015121
Uncharacterized protein.
 
     0.635
ENSSDUP00000012048
Uncharacterized protein.
 
     0.554
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.513
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.479
ENSSDUP00000000043
RT_RNaseH_2 domain-containing protein.
 
     0.425
ENSSDUP00000028716
CRC domain-containing protein.
    
 0.424
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.424
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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