STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ewsr1EWS RNA-binding protein 1b. (570 aa)    
Predicted Functional Partners:
ENSSDUP00000002880
Heterogeneous nuclear ribonucleoprotein M.
   
 0.889
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 
 0.787
tardbp
TAR DNA binding protein, like.
   
 0.737
LOC111222865
TAR DNA binding protein.
   
 0.737
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.707
LOC111239905
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.707
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
   
 0.677
snrpc
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
   
 
 0.674
POLR2E
RNA polymerase II subunit E.
    
 0.663
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  0.658
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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