STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr81WD repeat domain 81. (2082 aa)    
Predicted Functional Partners:
wdr91
WD repeat domain 91.
   
 
 0.959
becn1
Beclin 1, autophagy related.
    
 
 0.879
vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
  
 0.771
dipk2a
Divergent protein kinase domain 2Ab.
   
  
 0.710
FIG4
FIG4 phosphoinositide 5-phosphatase.
   
  
 0.710
LOC111219788
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
   
  
 0.696
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
      
 0.695
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
      
 0.669
atp6v0b
ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.
     
 0.660
sec63
SEC63 homolog, protein translocation regulator.
      
 0.652
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.