STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111219720Phosducin b. (236 aa)    
Predicted Functional Partners:
LOC111220578
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  
 0.859
LOC111223411
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 0.823
cplx4
Complexin 4a.
   
    0.820
LOC111219619
Guanine nucleotide binding protein (G protein), beta 5b.
   
 0.761
gnb5
Guanine nucleotide binding protein (G protein), beta 5a.
   
 0.761
cct7
T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
    
 0.756
LOC111233212
Guanine nucleotide binding protein (G protein), beta polypeptide 3b.
   
 0.717
gnb4
Guanine nucleotide binding protein (G protein), beta polypeptide 4b.
   
 0.707
LOC111234326
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
   
 0.701
gnb3
Guanine nucleotide binding protein (G protein), beta polypeptide 3a.
   
 0.701
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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