STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssh1Slingshot protein phosphatase 1a. (1066 aa)    
Predicted Functional Partners:
LOC111237172
Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family.
    
 0.940
cfl1
Cofilin 1; Belongs to the actin-binding proteins ADF family.
    
 0.940
dstn
ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.
    
 0.914
gak
Cyclin G associated kinase.
   
 0.410
nmd3
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
 
 0.407
limk2
LIM domain kinase 2.
   
 0.404
LOC111217057
LIM domain kinase 1b.
   
 0.404
LOC111228045
LIM domain kinase 1a.
   
 0.404
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.