STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000016575Si:ch211-10e2.1. (264 aa)    
Predicted Functional Partners:
rec114
REC114 meiotic recombination protein.
    
 
 0.606
hfm1
Helicase for meiosis 1.
      
 0.602
ENSSDUP00000023101
FA complementation group M.
      
 0.596
spo11
SPO11 initiator of meiotic double stranded breaks.
   
 
 0.560
tex11
Testis expressed 11.
    
 
 0.550
msh4
MutS homolog 4.
   
 
 0.484
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
      
 0.432
nsmce2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
   
 
 0.400
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.