cse1l protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cse1l

CSE1 chromosome segregation 1-like (yeast). (971 aa)

Predicted Functional Partners:

kpna3

0.971

kpna4

0.971

kpna1

0.970

ran

0.898

adgrd1

0.898

LOC111218510

0.744

kpnb1

0.744

LOC111229324

0.729

xpo6

0.729

LOC111238046

0.729

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111218510	LOC111229324	ENSSDUP00000018015	ENSSDUP00000014473	RAN binding protein 2.	Importin subunit alpha; Belongs to the importin alpha family.	0.732
LOC111218510	LOC111238046	ENSSDUP00000018015	ENSSDUP00000024588	RAN binding protein 2.	Importin subunit alpha; Belongs to the importin alpha family.	0.732
LOC111218510	adgrd1	ENSSDUP00000018015	ENSSDUP00000031584	RAN binding protein 2.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.983
LOC111218510	cse1l	ENSSDUP00000018015	ENSSDUP00000016582	RAN binding protein 2.	CSE1 chromosome segregation 1-like (yeast).	0.744
LOC111218510	kpna1	ENSSDUP00000018015	ENSSDUP00000022725	RAN binding protein 2.	Importin subunit alpha; Belongs to the importin alpha family.	0.732
LOC111218510	kpna3	ENSSDUP00000018015	ENSSDUP00000010249	RAN binding protein 2.	Importin subunit alpha; Belongs to the importin alpha family.	0.732
LOC111218510	kpna4	ENSSDUP00000018015	ENSSDUP00000033032	RAN binding protein 2.	Importin subunit alpha; Belongs to the importin alpha family.	0.732
LOC111218510	kpnb1	ENSSDUP00000018015	ENSSDUP00000022282	RAN binding protein 2.	Karyopherin (importin) beta 1.	0.959
LOC111218510	ran	ENSSDUP00000018015	ENSSDUP00000020401	RAN binding protein 2.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.983
LOC111218510	xpo6	ENSSDUP00000018015	ENSSDUP00000023852	RAN binding protein 2.	Exportin 6.	0.901
LOC111229324	LOC111218510	ENSSDUP00000014473	ENSSDUP00000018015	Importin subunit alpha; Belongs to the importin alpha family.	RAN binding protein 2.	0.732
LOC111229324	adgrd1	ENSSDUP00000014473	ENSSDUP00000031584	Importin subunit alpha; Belongs to the importin alpha family.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.620
LOC111229324	cse1l	ENSSDUP00000014473	ENSSDUP00000016582	Importin subunit alpha; Belongs to the importin alpha family.	CSE1 chromosome segregation 1-like (yeast).	0.729
LOC111229324	kpnb1	ENSSDUP00000014473	ENSSDUP00000022282	Importin subunit alpha; Belongs to the importin alpha family.	Karyopherin (importin) beta 1.	0.910
LOC111229324	ran	ENSSDUP00000014473	ENSSDUP00000020401	Importin subunit alpha; Belongs to the importin alpha family.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.620
LOC111238046	LOC111218510	ENSSDUP00000024588	ENSSDUP00000018015	Importin subunit alpha; Belongs to the importin alpha family.	RAN binding protein 2.	0.732
LOC111238046	adgrd1	ENSSDUP00000024588	ENSSDUP00000031584	Importin subunit alpha; Belongs to the importin alpha family.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.620
LOC111238046	cse1l	ENSSDUP00000024588	ENSSDUP00000016582	Importin subunit alpha; Belongs to the importin alpha family.	CSE1 chromosome segregation 1-like (yeast).	0.729
LOC111238046	kpnb1	ENSSDUP00000024588	ENSSDUP00000022282	Importin subunit alpha; Belongs to the importin alpha family.	Karyopherin (importin) beta 1.	0.910
LOC111238046	ran	ENSSDUP00000024588	ENSSDUP00000020401	Importin subunit alpha; Belongs to the importin alpha family.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.620