STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111223843Matrix metallopeptidase 14b (membrane-inserted). (633 aa)    
Predicted Functional Partners:
mmp2
Matrix metallopeptidase 2.
  
0.947
LOC111235670
Matrix metallopeptidase 14a (membrane-inserted).
  
  
 
0.901
LOC111227194
TIMP metallopeptidase inhibitor 2b.
   
 0.856
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.856
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.677
LOC111227525
Insulin-like growth factor binding protein 1a.
    
 0.641
myog
Myogenin.
    
 
 0.607
fbxo25
F-box protein 25.
   
  
 0.595
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.574
LOC111239398
MYCN proto-oncogene, bHLH transcription factor.
   
  
 0.569
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.