STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxcr4C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family. (384 aa)    
Predicted Functional Partners:
LOC111229327
Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.995
LOC111234130
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).
   
 0.980
LOC111219813
Uncharacterized protein.
    
 0.924
gna12
G protein subunit alpha 12.
    
 0.924
LOC111236257
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.924
LOC111228808
Chemokine (C-X-C motif) receptor 4a; Belongs to the G-protein coupled receptor 1 family.
  
  
 
0.902
LOC111235569
Atypical chemokine receptor 3; Belongs to the G-protein coupled receptor 1 family.
    
0.798
LOC111218781
Atypical chemokine receptor 3a; Belongs to the G-protein coupled receptor 1 family.
    
0.798
LOC111223644
Arrestin_C domain-containing protein.
   
 0.745
arrb2
Arrestin, beta 2a.
   
 0.745
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.