STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx40DEAH (Asp-Glu-Ala-His) box polypeptide 40. (744 aa)    
Predicted Functional Partners:
UTP14C
UTP14C small subunit processome component.
   
 0.845
utp3
UTP3 small subunit processome component.
   
 0.843
ddx49
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.
   
 0.838
slu7
SLU7 homolog, splicing factor.
   
 0.834
utp25
UTP25 small subunit processor component.
   
 0.829
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.819
nop14
NOP14 nucleolar protein homolog (yeast).
 
 
 0.819
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.815
prpf18
PRP18 pre-mRNA processing factor 18 homolog (yeast).
   
 0.812
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.809
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.