STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111227192Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a. (90 aa)    
Predicted Functional Partners:
LOC111223411
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 
 0.952
LOC111234173
Phosphodiesterase.
   
 
 0.948
LOC111218977
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
 
 0.946
LOC111222886
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.
   
 
 0.946
LOC111222841
Guanine nucleotide binding protein (G protein), beta polypeptide 1b.
   
 
 0.936
pde6g
Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.
  
 
 
0.906
LOC111236830
Guanylate cyclase.
     
 0.689
LOC111234372
Guanylate cyclase.
     
 0.689
LOC111233425
Guanylate cyclase.
     
 0.689
npr1
Guanylate cyclase.
     
 0.663
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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