STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYOCDMyocardin. (933 aa)    
Predicted Functional Partners:
srf
Serum response factor b.
    
 0.860
LOC111237574
MADS-box domain-containing protein.
    
 0.860
LOC111226631
NK2 homeobox 5.
   
  
 0.663
hand2
Heart and neural crest derivatives expressed 2.
   
  
 0.588
LOC111219937
Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.
   
 0.555
MAP2K4
Mitogen-activated protein kinase kinase 4; Belongs to the protein kinase superfamily.
   
 0.555
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.552
LOC111232170
Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily.
   
 0.501
map2k1
Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.
   
 0.501
LOC111229041
Mitogen-activated protein kinase kinase 2b.
   
 0.501
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.