STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwc15CWC15 spliceosome associated protein homolog. (248 aa)    
Predicted Functional Partners:
prpf19
Pre-mRNA processing factor 19.
    
 0.999
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.999
plrg1
Pleiotropic regulator 1.
   
 0.999
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.997
snw1
SNW domain containing 1.
   
 
 0.996
ctnnbl1
Catenin, beta like 1.
    
 0.996
bud31
BUD31 homolog.
   
 
 0.996
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.995
prpf8
Pre-mRNA processing factor 8.
    
 
 0.993
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.993
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.