STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000017303Uncharacterized protein. (111 aa)    
Predicted Functional Partners:
LOC111218131
Myosin, light chain 1, alkali; skeletal, fast.
   
 
 0.892
tmod3
Tropomodulin 2.
   
 0.730
LOC111234726
Troponin C type 2 (fast).
   
 
 0.684
tmod4
Tropomodulin 4 (muscle).
   
 0.614
tmod1
Tropomodulin 1.
   
 0.614
myot
Myotilin.
   
  
 0.603
lmod1
Leiomodin 1b (smooth muscle).
   
 0.548
LOC111229146
Uncharacterized protein.
    
  0.527
bcl6b
BCL6B transcription repressor.
    
  0.527
bcl6
BCL6A transcription repressor a.
    
  0.527
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.