STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000017458Uncharacterized protein. (177 aa)    
Predicted Functional Partners:
SUGP1
SURP and G-patch domain containing 1.
   
 0.769
ddx10
RNA helicase.
    
 0.691
nol6
Nucleolar protein 6.
   
 
 0.682
LOC111230140
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.679
LOC111217609
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.679
utp6
UTP6 small subunit processome component.
    
 
 0.664
bysl
Bystin-like.
    
 
 0.650
nom1
Nucleolar protein with MIF4G domain 1.
   
   0.646
rrp36
Ribosomal RNA processing 36.
   
   0.646
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
   0.640
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.