STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pinx1PIN2 (TERF1) interacting telomerase inhibitor 1. (393 aa)    
Predicted Functional Partners:
fbl
Fibrillarin.
   
   0.955
wdr46
WD repeat domain 46.
   
   0.955
bysl
Bystin-like.
   
   0.950
DHX15
DEAH-box helicase 15.
   
 
 0.927
LOC111231623
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 
 0.927
nom1
Nucleolar protein with MIF4G domain 1.
   
   0.926
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 
 0.925
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.923
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.890
GPATCH2L
G-patch domain containing 2 like.
    
 
 0.880
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.