STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111233417ZnMc domain-containing protein. (493 aa)    
Predicted Functional Partners:
LOC111227194
TIMP metallopeptidase inhibitor 2b.
   
 0.614
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.614
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.556
LOC111223843
Matrix metallopeptidase 14b (membrane-inserted).
  
0.502
dcn
Decorin; May affect the rate of fibrils formation.
   
 0.486
plg
Plasminogen; Belongs to the peptidase S1 family.
   
 0.468
mmp15
Matrix metallopeptidase 15b.
   
0.466
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.455
LOC111228646
Link domain-containing protein.
   
 0.452
LOC111221835
Opticin.
    
  0.431
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.