STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sh3rf3SH3 domain containing ring finger 3. (800 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.804
uxs1
UDP-glucuronate decarboxylase 1.
   
  
 0.730
asmtl
Acetylserotonin O-methyltransferase-like.
   
  
 0.695
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.695
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
      
 0.695
ENSSDUP00000025139
Uncharacterized protein.
      
 0.695
fbxw11
F-box and WD repeat domain containing 11b.
      
 0.695
gak
Cyclin G associated kinase.
   
 0.665
ENSSDUP00000009749
Ubiquitin-like domain-containing protein.
    
  0.660
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.660
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.