STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxc5Homeobox C5a. (228 aa)    
Predicted Functional Partners:
hoxc4
Homeobox C4a.
   
 
0.888
Hoxc6
Homeobox C6a.
   
 
0.886
LOC111223213
Homeobox A4.
  
 
0.783
LOC111227392
Homeobox domain-containing protein.
   
 
0.776
fgf5
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
   
 
 0.609
mpv17
Mitochondrial inner membrane protein MPV17; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.596
LOC111219811
Homeobox B6b.
  
 
0.589
LOC111218245
Homeobox D4a.
   
  
0.587
HOXA7
Homeobox A7.
   
  
0.587
LOC111227938
Homeobox B4a.
   
  
0.577
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.