popdc2 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

popdc2

Popeye domain containing 2. (382 aa)

Predicted Functional Partners:

LOC111218957

0.506

LOC111222717

0.500

ndrg4

0.497

LOC111228895

0.497

ramp2

0.496

rnf11

0.493

tgfbrap1

0.493

LOC111223976

0.493

hao1

0.493

LOC111228813

0.493

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111218957	LOC111222717	ENSSDUP00000020151	ENSSDUP00000012726	Troponin I type 1a (skeletal, slow).	Kelch-like family member 41b.	0.528
LOC111218957	LOC111223976	ENSSDUP00000020151	ENSSDUP00000021288	Troponin I type 1a (skeletal, slow).	Hydroxysteroid (17-beta) dehydrogenase 12b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.493
LOC111218957	LOC111228813	ENSSDUP00000020151	ENSSDUP00000025199	Troponin I type 1a (skeletal, slow).	Glypican 1b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.493
LOC111218957	LOC111228895	ENSSDUP00000020151	ENSSDUP00000008153	Troponin I type 1a (skeletal, slow).	Mohawk homeobox b.	0.493
LOC111218957	hao1	ENSSDUP00000020151	ENSSDUP00000025077	Troponin I type 1a (skeletal, slow).	Hydroxyacid oxidase (glycolate oxidase) 1.	0.493
LOC111218957	ndrg4	ENSSDUP00000020151	ENSSDUP00000003290	Troponin I type 1a (skeletal, slow).	NDRG family member 4.	0.493
LOC111218957	popdc2	ENSSDUP00000020151	ENSSDUP00000019353	Troponin I type 1a (skeletal, slow).	Popeye domain containing 2.	0.506
LOC111218957	ramp2	ENSSDUP00000020151	ENSSDUP00000024595	Troponin I type 1a (skeletal, slow).	Receptor (G protein-coupled) activity modifying protein 2.	0.497
LOC111218957	rnf11	ENSSDUP00000020151	ENSSDUP00000000028	Troponin I type 1a (skeletal, slow).	Ring finger protein 11b.	0.493
LOC111218957	tgfbrap1	ENSSDUP00000020151	ENSSDUP00000007206	Troponin I type 1a (skeletal, slow).	Transforming growth factor, beta receptor associated protein 1.	0.493
LOC111222717	LOC111218957	ENSSDUP00000012726	ENSSDUP00000020151	Kelch-like family member 41b.	Troponin I type 1a (skeletal, slow).	0.528
LOC111222717	LOC111223976	ENSSDUP00000012726	ENSSDUP00000021288	Kelch-like family member 41b.	Hydroxysteroid (17-beta) dehydrogenase 12b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.493
LOC111222717	LOC111228813	ENSSDUP00000012726	ENSSDUP00000025199	Kelch-like family member 41b.	Glypican 1b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.493
LOC111222717	LOC111228895	ENSSDUP00000012726	ENSSDUP00000008153	Kelch-like family member 41b.	Mohawk homeobox b.	0.500
LOC111222717	hao1	ENSSDUP00000012726	ENSSDUP00000025077	Kelch-like family member 41b.	Hydroxyacid oxidase (glycolate oxidase) 1.	0.493
LOC111222717	ndrg4	ENSSDUP00000012726	ENSSDUP00000003290	Kelch-like family member 41b.	NDRG family member 4.	0.497
LOC111222717	popdc2	ENSSDUP00000012726	ENSSDUP00000019353	Kelch-like family member 41b.	Popeye domain containing 2.	0.500
LOC111222717	ramp2	ENSSDUP00000012726	ENSSDUP00000024595	Kelch-like family member 41b.	Receptor (G protein-coupled) activity modifying protein 2.	0.497
LOC111222717	rnf11	ENSSDUP00000012726	ENSSDUP00000000028	Kelch-like family member 41b.	Ring finger protein 11b.	0.503
LOC111222717	tgfbrap1	ENSSDUP00000012726	ENSSDUP00000007206	Kelch-like family member 41b.	Transforming growth factor, beta receptor associated protein 1.	0.493