STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216520Uncharacterized protein. (643 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.957
LOC111230774
Uncharacterized protein.
    
 0.957
LOC111239812
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.957
sorl1
Sortilin-related receptor, L(DLR class) A repeats containing.
    
 
 0.885
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.876
igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.836
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.726
bace2
Beta-secretase 2; Belongs to the peptidase A1 family.
    
 0.596
bace1
Beta-secretase 1; Belongs to the peptidase A1 family.
    
 0.596
zfand4
Zinc finger, AN1-type domain 4.
    
 0.521
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.