STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111224843DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae). (657 aa)    
Predicted Functional Partners:
prkdc
Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.982
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.970
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.966
lig4
DNA ligase.
  
 0.906
ENSSDUP00000023101
FA complementation group M.
   
 0.867
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.866
sympk
Symplekin.
   
 0.848
fancm
Uncharacterized protein.
   
 0.842
ints4
Integrator complex subunit 4.
   
 0.826
fip1l1
FIP1 like 1b (S. cerevisiae).
    
 0.825
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.