STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erc2ELKS/RAB6-interacting/CAST family member 2. (1134 aa)    
Predicted Functional Partners:
ENSSDUP00000000294
PDZ domain-containing protein.
    
 
 0.808
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.808
LOC111220678
Regulating synaptic membrane exocytosis 1a.
    
 
 0.444
ENSSDUP00000000245
C2 domain-containing protein.
    
 
 0.434
rims3
Regulating synaptic membrane exocytosis 3.
    
 
 0.434
LOC111217884
Uncharacterized protein.
    
 
 0.434
ppfia4
PTPRF interacting protein alpha 4.
    
 
 0.417
ppfia1
PTPRF interacting protein alpha 1.
    
 
 0.417
ppfia2
PTPRF interacting protein alpha 2.
    
 
 0.417
LOC111217572
PTPRF interacting protein alpha 3.
    
 
 0.417
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.