STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228668Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (447 aa)    
Predicted Functional Partners:
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
  
 
0.997
LOC111218362
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
 0.987
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 0.987
tradd
Tnfrsf1a-associated via death domain.
   
 0.978
fadd
Uncharacterized protein.
   
 0.960
MLKL
Mixed lineage kinase domain like pseudokinase.
    
0.953
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 0.953
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
    
 0.946
LOC111235810
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
    
 0.946
LOC111235802
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
    
 0.946
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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