STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr5a1Nuclear receptor subfamily 5, group A, member 1a. (486 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.829
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 
 0.783
LOC111228176
Nuclear receptor subfamily 0, group B, member 2b.
   
0.782
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
   
0.782
LOC111227975
Homeobox B7a.
    
 0.723
NR0B1
Nuclear receptor subfamily 0 group B member 1.
    
0.704
LOC111222787
NR LBD domain-containing protein.
    
0.704
ncoa1
Nuclear receptor coactivator 1.
    
 0.665
LOC111233890
Uncharacterized protein.
    
 0.665
ncoa2
Nuclear receptor coactivator 2.
    
 0.665
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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