STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111234105Prune exopolyphosphatase. (422 aa)    
Predicted Functional Partners:
PRUNE1
Prune exopolyphosphatase.
  
  
 
0.904
hddc3
HD domain containing 3.
     
  0.900
bnip2
BCL2 interacting protein 2.
 
      0.681
LOC111239884
Prune homolog 2 with BCH domain.
 
    
 0.588
utp20
UTP20 small subunit processome component.
      
 0.574
smpd1
Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide.
    
 
 0.571
smpdl3b
Acid sphingomyelinase-like phosphodiesterase.
    
 
 0.571
ppp1r11
Protein phosphatase 1, regulatory (inhibitor) subunit 11.
      
 0.536
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
      
 0.534
asl
Argininosuccinate lyase.
     
 0.534
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.