STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111230695E3 ubiquitin-protein ligase. (886 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.909
LOC111233556
E3 ubiquitin-protein ligase.
  
  
 
0.900
egfr
Receptor protein-tyrosine kinase.
    
 0.798
LOC111237405
Receptor protein-tyrosine kinase.
    
 0.798
ubb
Uncharacterized protein.
    
 0.780
ubc
Uncharacterized protein.
    
 0.780
txnip
Thioredoxin interacting protein.
    
 
 0.763
LOC111234118
Arrestin_C domain-containing protein.
    
 
 0.763
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.734
LOC111228782
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.734
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.