LOC111222368 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111222368

Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (458 aa)

Predicted Functional Partners:

LOC111230490

0.600

GLRB

0.597

gphn

0.473

LOC111225485

0.473

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLRB	LOC111222368	ENSSDUP00000001850	ENSSDUP00000019880	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.597
GLRB	LOC111225485	ENSSDUP00000001850	ENSSDUP00000028794	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.828
GLRB	gphn	ENSSDUP00000001850	ENSSDUP00000005407	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.828
LOC111222368	GLRB	ENSSDUP00000019880	ENSSDUP00000001850	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.597
LOC111222368	LOC111225485	ENSSDUP00000019880	ENSSDUP00000028794	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.473
LOC111222368	LOC111230490	ENSSDUP00000019880	ENSSDUP00000007275	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.600
LOC111222368	gphn	ENSSDUP00000019880	ENSSDUP00000005407	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.473
LOC111225485	GLRB	ENSSDUP00000028794	ENSSDUP00000001850	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.828
LOC111225485	LOC111222368	ENSSDUP00000028794	ENSSDUP00000019880	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.473
LOC111225485	LOC111230490	ENSSDUP00000028794	ENSSDUP00000007275	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.828
LOC111230490	LOC111222368	ENSSDUP00000007275	ENSSDUP00000019880	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.600
LOC111230490	LOC111225485	ENSSDUP00000007275	ENSSDUP00000028794	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.828
LOC111230490	gphn	ENSSDUP00000007275	ENSSDUP00000005407	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.828
gphn	GLRB	ENSSDUP00000005407	ENSSDUP00000001850	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.828
gphn	LOC111222368	ENSSDUP00000005407	ENSSDUP00000019880	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.473
gphn	LOC111230490	ENSSDUP00000005407	ENSSDUP00000007275	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.828