STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abca12ATP-binding cassette, sub-family A (ABC1), member 12. (4329 aa)    
Predicted Functional Partners:
LOC111221354
NIPA like domain containing 4.
   
  
 0.569
abcf2
ATP-binding cassette, sub-family F (GCN20), member 2b.
      
 0.565
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
      
 0.562
LOC111236522
Si:dkeyp-117b11.1.
      
 0.561
ENSSDUP00000017178
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.549
LOC111235756
Uncharacterized protein.
    
 0.490
LOC111235780
Uncharacterized protein.
    
 0.490
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.478
maip1
Matrix AAA peptidase interacting protein 1.
      
 0.469
LOC111236907
Si:dkey-82o10.4.
      
 0.469
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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