STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111224004Kazrin, periplakin interacting protein b. (712 aa)    
Predicted Functional Partners:
ENSSDUP00000000294
PDZ domain-containing protein.
   
 0.968
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 0.968
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.807
CASK-2
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.807
ppl
Periplakin.
    
 0.584
LOC111238113
Envoplakin b.
    
 0.528
evpl
Envoplakin a.
    
 0.528
PPFIBP2
PPFIA binding protein 2.
   
0.526
LOC111224598
Uncharacterized protein.
   
0.526
ppfibp1
PPFIA binding protein 1b.
   
0.526
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.