STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111229142Uncharacterized protein. (1090 aa)    
Predicted Functional Partners:
LOC111217580
Intersectin 2b.
   
 0.676
itsn2
Intersectin 2a.
   
 0.676
efnb1
Ephrin-B1; Belongs to the ephrin family.
   
 0.612
LOC111226056
Ephrin-A2a; Belongs to the ephrin family.
   
 0.602
ENSSDUP00000021827
Ephrin RBD domain-containing protein; Belongs to the ephrin family.
   
 0.602
LOC111221222
Ephrin-A5a; Belongs to the ephrin family.
   
 0.591
EFNA5
Ephrin A5; Belongs to the ephrin family.
   
 0.591
LOC111231352
Ephrin-B3a; Belongs to the ephrin family.
   
 0.577
efnb2
Ephrin-B2a; Belongs to the ephrin family.
   
 0.576
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.558
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.