STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhf2Pleckstrin homology domain containing, family F (with FYVE domain) member 2. (244 aa)    
Predicted Functional Partners:
plekhh2
Pleckstrin homology domain containing, family H (with MyTH4 domain) member 2.
      
 0.585
neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.556
fam43a
Family with sequence similarity 43 member A.
      
 0.538
snx29
Sorting nexin 29.
    
 
 0.502
micu1
Mitochondrial calcium uptake 1.
   
 0.479
micu2
Mitochondrial calcium uptake 2.
   
 0.479
LOC111231508
Single-pass membrane protein with aspartate-rich tail 1b.
     
 0.469
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.469
PLEKHG1
Pleckstrin homology and RhoGEF domain containing G1.
      
 0.463
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
      
 0.446
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.