STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atp8a2Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1123 aa)    
Predicted Functional Partners:
LOC111218227
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.681
LOC111240410
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.681
LOC111226087
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.681
LOC111225460
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.667
ush2a
Usher syndrome 2A (autosomal recessive, mild).
   
 
 0.547
stox1
Storkhead box 1.
      
 0.538
pln
Cardiac phospholamban; Reversibly inhibits the activity of ATP2A2 in cardiac sarcoplasmic reticulum by decreasing the apparent affinity of the ATPase for Ca(2+). Modulates the contractility of the heart muscle in response to physiological stimuli via its effects on ATP2A2. Modulates calcium re-uptake during muscle relaxation and plays an important role in calcium homeostasis in the heart muscle. The degree of ATP2A2 inhibition depends on the oligomeric state of PLN.
    
 0.529
slc26a5
Solute carrier family 26 member 5.
   
  
 0.526
ENSSDUP00000024103
Serine/arginine repetitive matrix 4.
   
 
 0.471
adgrv1
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.460
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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