STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Synapse defective Rho GTPase homolog 1. (972 aa)    
Predicted Functional Partners:
ENSSDUP00000024683
Minamoto.
      
 0.602
gcm2
Glial cells missing transcription factor 2.
      
 0.601
ilvbl
IlvB (bacterial acetolactate synthase)-like; Belongs to the TPP enzyme family.
      
 0.595
ENSSDUP00000000294
PDZ domain-containing protein.
      
 0.561
RIMS2
Regulating synaptic membrane exocytosis 2.
      
 0.561
ppp4r3a
SMEK homolog 1, suppressor of mek1 (Dictyostelium).
      
 0.547
LOC111234233
Ras homolog family member F.
    
 0.541
barx1
BARX homeobox 1.
      
 0.487
nr6a1
Nuclear receptor subfamily 6, group A, member 1a.
      
 0.470
LOC111221873
Uncharacterized protein.
    
 0.458
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.