STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217337Si:dkey-222n6.2; Belongs to the intermediate filament family. (430 aa)    
Predicted Functional Partners:
bag3
BCL2 associated athanogene 3.
    
 0.587
rps27a
Ribosomal protein S27a.
    
  0.483
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.451
trip12
Thyroid hormone receptor interactor 12.
     
 0.443
birc6
Baculoviral IAP repeat containing 6.
   
 0.438
ENSSDUP00000030530
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.438
bag2
BCL2 associated athanogene 2.
    
 
 0.436
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
    
 0.426
LOC111235810
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
    
 0.426
LOC111235802
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
    
 0.426
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.