STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111219839Metastasis associated 1 family, member 3. (622 aa)    
Predicted Functional Partners:
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.819
LOC111225540
WD_REPEATS_REGION domain-containing protein.
   
 0.819
LOC111218630
WD_REPEATS_REGION domain-containing protein.
   
 0.819
LOC111232223
Methyl-CpG binding domain protein 3a.
   
 0.813
LOC111221184
Methyl-CpG binding domain protein 2.
   
 0.813
LOC111229007
Uncharacterized protein.
   
 0.808
wdr73
WD repeat domain 73.
   
 0.782
mbd4
Methyl-CpG binding domain protein 4.
   
 0.744
mecp2
Methyl CpG binding protein 2.
   
 0.744
LOC111233164
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
   
 0.743
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (20%) [HD]