STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col4a6Collagen, type IV, alpha 6. (1480 aa)    
Predicted Functional Partners:
itgb4
Integrin beta.
   
 0.700
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.699
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.699
LOC111217494
Integrin beta; Belongs to the integrin beta chain family.
    
 0.699
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.698
LOC111233864
Integrin beta; Belongs to the integrin beta chain family.
    
 0.698
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.697
itga2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
   
 
 0.693
itga11
Integrin, alpha 11a; Belongs to the integrin alpha chain family.
     
 0.688
itga10
Integrin, alpha 10; Belongs to the integrin alpha chain family.
     
 0.688
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.