STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111227674Thrombospondin 4a. (933 aa)    
Predicted Functional Partners:
acan
Aggrecan b.
   
 0.538
LOC111223064
Aggrecan a.
   
 0.538
ENSSDUP00000004365
Uncharacterized protein.
   
 0.469
LOC111218510
RAN binding protein 2.
   
 0.440
LOC111216899
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.422
LOC111232025
Im:7152348.
   
 0.408
ENSSDUP00000000441
AT rich interactive domain 4A (RBP1-like).
    
 0.407
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.407
LOC111231549
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.404
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.404
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.