STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111237494Uncharacterized protein. (1312 aa)    
Predicted Functional Partners:
aasdhppt
Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.
 
      0.466
cntn2
Contactin 2.
   
 0.449
LOC111219202
Contactin 3a, tandem duplicate 1.
   
 0.407
LOC111219131
Contactin 3a, tandem duplicate 2.
   
 0.407
cntn1
Contactin 1b.
   
 0.407
LOC111221724
Contactin 4.
   
 0.407
ENSSDUP00000016116
Uncharacterized protein.
   
 0.407
LOC111221616
Contactin 3b.
   
 0.407
cntn5
Contactin 5.
   
 0.407
CNTN1
Contactin 1.
   
 0.407
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.