STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata3GATA binding protein 3. (443 aa)    
Predicted Functional Partners:
NLRC5
NLR family CARD domain containing 5.
      
 0.773
LOC111232758
Runt-related transcription factor.
    
 0.770
LOC111219011
Signal transducer and activator of transcription.
   
 0.745
foxa1
Fork-head domain-containing protein.
    
 0.709
nfyb
Nuclear transcription factor Y, beta a.
    
 
 0.682
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.671
nfyc
Nuclear transcription factor Y, gamma.
   
 
 0.667
zfpm1
Zinc finger protein, FOG family member 1.
    
 0.663
glrx3
Glutaredoxin 3.
    
 
 0.660
cbfb
Core-binding factor subunit beta.
     
 0.646
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.