STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111230715Zgc:136971. (620 aa)    
Predicted Functional Partners:
prep
Prolyl endopeptidase.
   
 
 0.524
ist1
IST1 factor associated with ESCRT-III.
    
   0.512
ENSSDUP00000010547
Motilin_assoc domain-containing protein.
   
 
 0.488
ENSSDUP00000004365
Uncharacterized protein.
   
 
  0.475
LOC111228524
Uncharacterized protein.
     
 0.475
NCSTN
Nicastrin.
   
  
 0.461
sec11a
Signal peptidase complex catalytic subunit SEC11.
   
 
 0.459
grp
Uncharacterized protein.
   
 
 0.458
LOC111220832
Si:dkey-211g8.9.
     
 0.426
LOC111233181
Trio Rho guanine nucleotide exchange factor a.
   
 
  0.411
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.