STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111238666Si:dkeyp-86f7.4. (361 aa)    
Predicted Functional Partners:
otub1
Ubiquitin thioesterase.
    
 0.922
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
    
 0.733
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.705
s100z
Protein S100; Belongs to the S-100 family.
      
 0.643
LOC111222164
Retinal outer segment membrane protein 1a.
    
 
 0.619
LOC111229874
PNPLA domain-containing protein.
      
 0.600
LOC111223908
Peripherin 2b (retinal degeneration, slow).
    
 
 0.597
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.558
LOC111239405
Ubiquitin carboxyl-terminal hydrolase.
    
 0.543
LOC111233086
Ubiquitin carboxyl-terminal hydrolase.
    
 0.543
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.