STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111222187Estrogen-related receptor alpha. (433 aa)    
Predicted Functional Partners:
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
   
 0.982
LOC111232566
Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.
    
 0.869
nrip1
Nuclear receptor interacting protein 1b.
    
 0.719
ncor1
Nuclear receptor corepressor 1.
    
 0.682
ncor2
Nuclear receptor corepressor 2.
    
 0.682
ENSSDUP00000010703
Uncharacterized protein.
    
 0.595
med1
Mediator complex subunit 1.
    
 0.582
LOC111220338
Estrogen-related receptor gamma a.
  
 
 
0.565
ESRRB
Estrogen-related receptor beta.
  
 
 
0.565
LOC111240361
Uncharacterized protein.
  
 
 
0.565
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.