STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216542ATP-binding cassette, sub-family G (WHITE), member 2b. (617 aa)    
Predicted Functional Partners:
LOC111240116
ATP-binding cassette, sub-family G (WHITE), member 2d.
  
  
 
0.903
LOC111233343
ATP-binding cassette, sub-family G (WHITE), member 2a.
  
  
 
0.903
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5.
   
0.826
abcc2
Uncharacterized protein.
  
0.747
atp5f1c
ATP synthase subunit gamma.
   
   0.516
atp5f1d
ATP synthase F1 subunit delta.
   
   0.499
apoa4
Apolipoprotein A-Ib.
   
 0.466
ATP5F1A
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.459
LOC111239888
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.459
LOC111235756
Uncharacterized protein.
   
 0.457
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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