STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps51VPS51 subunit of GARP complex. (836 aa)    
Predicted Functional Partners:
vps53
VPS53 subunit of GARP complex.
    
 0.999
vps52
VPS52 subunit of GARP complex.
   
 0.995
vps54
VPS54 subunit of GARP complex.
   
 0.991
vps50
VPS50 EARP/GARPII complex subunit.
    
 0.982
stx10
Syntaxin 10.
    
 0.930
stx6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.930
eipr1
EARP complex and GARP complex interacting protein 1.
   
 
 0.912
COG5
Component of oligomeric golgi complex 5.
   
 
 0.870
stx8
t-SNARE coiled-coil homology domain-containing protein.
    
 0.869
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.863
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.