STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111234704Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (443 aa)    
Predicted Functional Partners:
csad
Cysteine sulfinic acid decarboxylase.
 
 0.895
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 
 0.825
Fh
Fumarate hydratase.
   
 0.769
adhfe1
Alcohol dehydrogenase iron containing 1.
  
 
 0.742
hgd
Homogentisate 1,2-dioxygenase.
   
  
 0.737
gad2
Glutamate decarboxylase 2.
 
 0.735
gad1
Glutamate decarboxylase 1a.
 
 0.685
upb1
Ureidopropionase, beta.
  
 
 0.674
LOC111228750
Glutamate decarboxylase 1b.
 
 0.649
otc
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.635
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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